泛癌分析探讨COL5A1基因在人肿瘤的预后分析和免疫浸润中的作用
A pan-cancer analysis to explore the role of COL5A1 gene in prognosis analysis and immune infiltration of human tumors
投稿时间:2024-06-19  修订日期:2024-11-10
DOI:
中文关键词:  COL5A1  肿瘤微环境  预后分析  免疫浸润  泛癌分析
英文关键词:COL5A1  Tumor microenvironment  Prognostic analysis  Immune infiltration  Pan-cancer analysis
基金项目:福建省自然科学基金
作者单位邮编
葛茹茹 福建医科大学孟超肝胆医院泌尿外科 350000
方潇 福建医科大学孟超肝胆医院 
高帅 福建医科大学孟超肝胆医院 
戴天增 福建医科大学孟超肝胆医院 
周智华* 福建医科大学孟超肝胆医院 350025
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中文摘要:
      目的 探讨COL5A1基因在泛癌中的基因及蛋白表达水平,并探讨其与临床预后和肿瘤免疫浸润的关系。方法 在这项研究中,我们分析了来自癌症基因组图谱(the cancer genome atlas,TCGA)数据库的癌症患者。使用TIMER2.0、GEPIA2、Sangerbox、人类蛋白图谱(human protein atlas,HPA)和STRING分析等生物信息学工具分析COL5A1基因与泛癌的关系。结果 本研究发现COL5A1在17种不同的癌和癌旁组织中的表达水平有差异,影响9种癌症类型患者的预后。此外,COL5A1的表达与肿瘤微环境(tumor microenvironment,TME)免疫检查点(immune checkpoints,ICP)、肿瘤突变负荷(tumor mutational burden,TMB)和微卫星人类癌症中的不稳定性(microsatellite instability,MSI)显著相关。此外,COL5A1阳性表达与B细胞、T细胞、中性粒细胞、巨噬细胞和抗原递呈细胞的在肿瘤中的免疫浸润相关。结论 COL5A1是TME的重要组成部分,影响免疫细胞浸润,使其成为评估许多恶性肿瘤的免疫浸润和预后分析的一个重要肿瘤标志物。
英文摘要:
      PURPOSE The COL5A1 gene encodes a low abundance fibrillar collagen α However, the regulation of the tumor microenvironment and its impact on the prognosis of patients with tumors are currently unclear. This study mainly explores the role of COL5A1 gene in the prognosis and tumor immunology of pan cancer. METHOD In this study, we analyzed cancer patients from the cancer genome atlas (TCGA) database. Analyze the COL5A1 gene and its relationship with pan oncogenes using TIMER2.0, GEPIA2, Sangerbox, human protein atlas (HPA), and STRING. RESULT This study found that there were differences in the expression levels of COL5A1 in 17 different types of cancer and adjacent tissues, which affected the prognosis of 9 types of cancer patients. In addition, the expression of COL5A1 is significantly correlated with tumor microenvironment (TME), immune checkpoints (ICP), tumor mutation burden (TMB), and microsatellite instability (MSI) in human cancer. In addition, COL5A1 positive expression is associated with immune infiltration of B cells, T cells, neutrophils, macrophages, and antigen-presenting cells. CONCLUSION COL5A1 is an important component of TME, affecting immune cell infiltration and making it an important tumor marker for evaluating immune infiltration and prognostic analysis in many malignant tumors.
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